Category definition for Sequences (1)
Distances are important. Arthropods vs Mammals for example (1)
What are the compositional differences between Prokaryotes' gene/genome and Eukaryotes gene/genome (2)
Paper: An experimental phylogeny to benchmark ancestral sequence reconstruction (1)
Reconstructing identity of amino acids that are 'missing data' in extant sequences (2)
[Paper] Site-specific rates of evolution, gamma distribution etc (3)
Standardized Test Sets for evaluating Software/Methods (14)
Calculating distances with ambiguity codes (R, Y, N etc) in the data (4)
Complex substitution models and large datasets -- how to make it possible to do the analysis (15)
[Paper] Correcting for sequencing error in maximum likelihood phylogeny inference (4)
[Paper] Hypermutable DNA chronicles the evolution of human colon cancer (7)
[Paper] Efficient Continuous-Time Markov Chain Estimation (in very large state spaces) (1)
Criteria for deciding if concatenation of dna alignments to a supermatrix is "allowed" (12)
Quantifying support in the face of missing data (11)
Current best practice for simulating viral sequences? (12)
Primate complete genomes: Neanderthal, Denisova, Chimpanzees etc (3)
DIstance-based methods and incomplete sequence matrix (4)
Matrix strategies to avoid rate matrix exponentiation (4)
Let's quantify the impact of missing data (19)
B cell receptor within-host molecular evolution (2)
[Paper] An experimentally determined evolutionary model dramatically improves phylogenetic fit (3)