Sequences


Topic Replies Activity
Category definition for Sequences 1 February 9, 2014
Criteria for deciding if concatenation of dna alignments to a supermatrix is "allowed" 13 February 3, 2021
Indel models: Why continuous time? 3 July 28, 2020
Several burning questions 5 December 18, 2019
Distances are important. Arthropods vs Mammals for example 1 September 13, 2018
What are the compositional differences between Prokaryotes' gene/genome and Eukaryotes gene/genome 2 January 10, 2018
Paper: An experimental phylogeny to benchmark ancestral sequence reconstruction 1 February 13, 2017
Reconstructing identity of amino acids that are 'missing data' in extant sequences 2 December 12, 2016
[Paper] Site-specific rates of evolution, gamma distribution etc 3 August 2, 2016
Standardized Test Sets for evaluating Software/Methods 14 April 13, 2016
Calculating distances with ambiguity codes (R, Y, N etc) in the data 4 June 29, 2015
Complex substitution models and large datasets -- how to make it possible to do the analysis 15 February 9, 2015
[Paper] Correcting for sequencing error in maximum likelihood phylogeny inference 4 January 30, 2015
[Paper] Hypermutable DNA chronicles the evolution of human colon cancer 7 October 1, 2014
[Paper] Efficient Continuous-Time Markov Chain Estimation (in very large state spaces) 1 June 26, 2014
Quantifying support in the face of missing data 11 May 21, 2014
Current best practice for simulating viral sequences? 12 April 12, 2014
Primate complete genomes: Neanderthal, Denisova, Chimpanzees etc 3 April 12, 2014
DIstance-based methods and incomplete sequence matrix 4 April 8, 2014
Matrix strategies to avoid rate matrix exponentiation 4 March 26, 2014
Let's quantify the impact of missing data 19 March 25, 2014
B cell receptor within-host molecular evolution 2 March 20, 2014
[Paper] An experimentally determined evolutionary model dramatically improves phylogenetic fit 3 February 24, 2014