Software


Category definition for Software (1)
Balanced minimum evolution computation in R (3)
Split decomposition (3)
IQ-TREE: Phylogenomic inference software (4)
Interactive Phylogentic Tree (1)
Looking for a zoomable tree to interface with mySQL for selection (2)
Speeding up Felsenstein's pruning algorithm (7)
RelTime rates collapses to a strict clock (2)
Unit tests for phylogenetic likelihood computation? (10)
Phylobayes: alpha, statalpha, rrmean, rrent, statent and Nmode parameters (1)
A sane parsimony implementation (6)
Exporting ancestral reconstructions from PAUP* (2)
PLL (Phylogenetic Likelihood Library from Stamatakis group) is up (10)
Ggtree for viewing and annotating phylogenetic tree (2)
Manually editing alignments on a mac (14)
[Paper] PUmPER: phylogenies updated perpetually (2)
Mesquite and TreeBASE NEXUS file formats (5)
Concatenate many genes together for each taxon (1)
Genesis SW for post-processing phylogenetic placements (5)
Efficient detection of repeating sites to accelerate phylogenetic likelihood calculations (2)
Phylogenetic Placement Visualization (1)
The State of Software in Evolutionary Biology (4)
`rotl`, an R package to access the Open Tree of Life data (1)
Visualising big trees (again) (5)
p4 Python phylogenetics toolkit (1)
DendroPy 4.0.0 has been released (3)
Interesting phylogenetic search heuristics (4)
Dryad and GPL software (5)
Not so fast, FastTree (3)
Geophylogenies using GeoJSON (6)