Category definition for Topology
Generalizing tree probability estimation via Bayesian networks
Generating a set of trees that are as different from each other as possible
Number of labeled histories given a topology?
"Online" algorithm for building phylogeny
Invariants vs ML (as per Casanellas-Rius and Felsenstein)
Long Branches Attract problem, and forcing a fix on it?
Constrained neighbour joining
Calculating likelihood of a given tree under birth/death
How to recognize a rearranged tree?
Testing for 'sampled ancestors'/sequences at internal nodes
Nice review: the shape of phylogenetic tree space
Counting topologies with complex constraints
Reconstructing Phylogenetic Tree / missing data
Maximum Likelihood tree reconstruction pipeline
Maximum parsimony. Wheather the best tree should be completely resolved under this criteria?
Tree comparison using Laplacian spectra
Some questions about trees
Fitch algorithm for non-binary trees
Discrete Morse theory for the analysis of tree spaces
Sampling from the SPR random walk on rooted trees
[Paper] The space of ultrametric phylogenetic trees
What to do if AU test accepts a hypothesis, while SH test rejects with a p-value of 0
Non-phylogenetic analysis of genetic relationships
Number of bootstrap replicates for short alignments
Paper developing a new approach to phylogenetic tree shape
Description of the MrBayes parsimony-based proposals
How to improve external node support on a supertree?
How to infer topology and clade support with very low diversity alignments?
Upcoming talk on phylogenetic MCMC mixing using SPR distance
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