Topology
Category definition for Topology
(1)
Generating a set of trees that are as different from each other as possible
(8)
Number of labeled histories given a topology?
(6)
"Online" algorithm for building phylogeny
(6)
Invariants vs ML (as per Casanellas-Rius and Felsenstein)
(4)
Long Branches Attract problem, and forcing a fix on it?
(6)
Constrained neighbour joining
(2)
Calculating likelihood of a given tree under birth/death
(4)
How to recognize a rearranged tree?
(13)
Testing for 'sampled ancestors'/sequences at internal nodes
(3)
Nice review: the shape of phylogenetic tree space
(1)
Counting topologies with complex constraints
(9)
Reconstructing Phylogenetic Tree / missing data
(1)
Maximum Likelihood tree reconstruction pipeline
(5)
Maximum parsimony. Wheather the best tree should be completely resolved under this criteria?
(2)
Tree comparison using Laplacian spectra
(3)
Some questions about trees
(5)
Fitch algorithm for non-binary trees
(2)
Discrete Morse theory for the analysis of tree spaces
(1)
Sampling from the SPR random walk on rooted trees
(10)
[Paper] The space of ultrametric phylogenetic trees
(1)
What to do if AU test accepts a hypothesis, while SH test rejects with a p-value of 0
(2)
Non-phylogenetic analysis of genetic relationships
(3)
Number of bootstrap replicates for short alignments
(8)
Paper developing a new approach to phylogenetic tree shape
(5)
Description of the MrBayes parsimony-based proposals
(2)
How to improve external node support on a supertree?
(1)
How to infer topology and clade support with very low diversity alignments?
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(24)
Upcoming talk on phylogenetic MCMC mixing using SPR distance
(9)
Statistical consistency of OTOL methods?
(3)
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