The theory and practice of tree and network topology estimation, including inferring statistical support for clades, gene-tree species-tree discordance, as well as coalescent and birth-death processes.
Having trouble designing or running an analysis? This is the category for you.
Discussion of practical aspects of pre- and post-processing phylogenetic trees, such as obtaining data, reformatting data, and tree visualization.
Event announcements interest to the phylogenetics community: workshops, meetings, and grants.
Software release announcements and discussion.
Nucleotide and amino acid sequences and their evolution, including models of molecular evolution and sequencing errors.
Phylogenetic inference that includes a temporal component: rate estimation, fossils, and tip-dated trees for measurably evolving populations.
Announcements of open positions at all levels. If this starts getting too crowded, we will split it off by type of position.
Discussion about this forum, its organization, how it works, and how we can improve it.
Discussion about what is appropriate to compare to what, including sequence alignment, morphometric comparison, as well as tests for recombination and paralogy.
Trait evolution theory and practice, including macroevolution and phylogeography.
Theory and methods for taxonomic definitions, including taxonomic hierarchies, species concepts, and species delimitation.
Interoperability, reproducibility, sharing, and reuse of phylogenetic data and software.