Does anyone know how to export the ancestral state reconstructions at nodes in trees estimated by PAUP*? The “Reconstruct” command works to generate them, but there doesn’t seem to be any straightforward way to export a list of nodes with the ancestral ‘sequences’ at each node…or maybe there is, but its not obvious (help?)
Did you manage to figure this out? I’m trying to do the same thing presently, and can only get out tree representations of position by position character states.
I’ll post if I find anything.